WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Description  Genes that showed expression levels higher than the corresponding reference sample (L2 all cell reference).
Primary Identifier  WBPaper00037950:intestine_L2-larva_expressed

1 Anatomy Terms

Definition Name Synonym Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages. intestine gut WBbt:0005772

7537 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000001 aap-1 Y110A7A.10 Caenorhabditis elegans
WBGene00000002 aat-1 F27C8.1 Caenorhabditis elegans
WBGene00000007 aat-6 T11F9.4 Caenorhabditis elegans
WBGene00000009 aat-8 F28F9.4 Caenorhabditis elegans
WBGene00000019 abt-1 C24F3.5 Caenorhabditis elegans
WBGene00000020 abt-2 F12B6.1 Caenorhabditis elegans
WBGene00000022 abt-4 Y39D8C.1 Caenorhabditis elegans
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000036 ace-2 Y44E3A.2 Caenorhabditis elegans
WBGene00000040 aco-1 ZK455.1 Caenorhabditis elegans
WBGene00000050 acr-11 D2092.3 Caenorhabditis elegans
WBGene00000056 acr-17 F53E10.2 Caenorhabditis elegans
WBGene00000060 acr-21 F27B3.2 Caenorhabditis elegans
WBGene00000067 act-5 T25C8.2 Caenorhabditis elegans
WBGene00000071 acy-4 T01C2.1 Caenorhabditis elegans
WBGene00000072 add-1 F39C12.2 Caenorhabditis elegans
WBGene00000073 add-2 F57F5.4 Caenorhabditis elegans
WBGene00000074 adm-2 C04A11.4 Caenorhabditis elegans
WBGene00000075 adm-4 ZK154.7 Caenorhabditis elegans
WBGene00000084 aex-1 D2030.10 Caenorhabditis elegans
WBGene00000089 aex-6 Y87G2A.4 Caenorhabditis elegans
WBGene00000092 ags-3 F32A6.4 Caenorhabditis elegans
WBGene00000093 agt-1 Y62E10A.5 Caenorhabditis elegans
WBGene00000095 aha-1 C25A1.11 Caenorhabditis elegans
WBGene00000097 aip-1 F58E10.4 Caenorhabditis elegans
WBGene00000098 air-1 K07C11.2 Caenorhabditis elegans
WBGene00000100 ajm-1 C25A11.4 Caenorhabditis elegans
WBGene00000107 alh-1 F54D8.3 Caenorhabditis elegans
WBGene00000108 alh-2 K04F1.15 Caenorhabditis elegans
WBGene00000109 alh-3 F36H1.6 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027

0 Processes

0 Regulated By Gene

0 Regulated By Molecule