WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively. Description  Transcripts that showed significantly decreased expression in 100-cell stage embryo of let-418(RNAi) animals, comparing to in control RNAi (with gfp control vector) animals.
Primary Identifier  WBPaper00050163:let-418(RNAi)_downregulated_100-cell-embryo

0 Anatomy Terms

145 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000138 amx-2 B0019.1 Caenorhabditis elegans
WBGene00000511 ckb-1 B0285.8 Caenorhabditis elegans
WBGene00000695 col-121 F56D5.1 Caenorhabditis elegans
WBGene00000895 dac-1 B0412.1 Caenorhabditis elegans
WBGene00000936 dbl-1 T25F10.2 Caenorhabditis elegans
WBGene00000958 dgk-1 C09E10.2 Caenorhabditis elegans
WBGene00001429 fkb-4 ZC455.10 Caenorhabditis elegans
WBGene00001432 fkb-7 B0511.1 Caenorhabditis elegans
WBGene00001716 grl-7 T02E9.2 Caenorhabditis elegans
WBGene00002030 hst-3.1 F40H3.5 Caenorhabditis elegans
WBGene00002637 let-418 F26F12.7 Caenorhabditis elegans
WBGene00004011 pha-2 M6.3 Caenorhabditis elegans
WBGene00004154 pqn-72 W01B11.5 Caenorhabditis elegans
WBGene00005078 src-2 F49B2.5 Caenorhabditis elegans
WBGene00005257 srh-34 M02H5.10 Caenorhabditis elegans
WBGene00006642 tsp-16 F01E11.4 Caenorhabditis elegans
WBGene00006824 unc-95 Y105E8A.6 Caenorhabditis elegans
WBGene00007349 C05G5.3 C05G5.3 Caenorhabditis elegans
WBGene00007693 cest-7 C23H4.4 Caenorhabditis elegans
WBGene00007764 C27B7.7 C27B7.7 Caenorhabditis elegans
WBGene00007906 C33G3.6 C33G3.6 Caenorhabditis elegans
WBGene00007983 C36E8.4 C36E8.4 Caenorhabditis elegans
WBGene00008497 F01D5.7 F01D5.7 Caenorhabditis elegans
WBGene00008629 cpt-5 F09F3.9 Caenorhabditis elegans
WBGene00008713 F11E6.10 F11E6.10 Caenorhabditis elegans
WBGene00008977 iglr-1 F20D1.7 Caenorhabditis elegans
WBGene00008988 F20G2.5 F20G2.5 Caenorhabditis elegans
WBGene00009148 F26D2.3 F26D2.3 Caenorhabditis elegans
WBGene00009234 F28H6.6 F28H6.6 Caenorhabditis elegans
WBGene00010973 rip-1 R01H10.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The C. elegans life stage spanning 155-165 min after first cleavage at 20 Centigrade. Contains 96 cells. 96-cell embryo Ce WBls:0000090

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002637 let-418 F26F12.7 Caenorhabditis elegans

0 Regulated By Molecule