WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For RNA-seq and tiling arrays, log2 fold changes between gene expression values of infected versus uninfected nematodes were calculated. For log2 fold changes > 0.00001 the values > 81.25th percentile were defined as up-regulated and for log2 fold changes < -0.00001 the values < 18.75th percentile were defined as down-regulated. Description  Genes with increased expression after 24 hours of infection by E.faecalis Fold changes shown are pathogen vs OP50.
Primary Identifier  WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq Regulated By Treatment  Bacteria infection: Enterococcus faecalis

0 Anatomy Terms

3386 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000002 aat-1 F27C8.1 Caenorhabditis elegans
WBGene00000003 aat-2 F07C3.7 Caenorhabditis elegans
WBGene00000005 aat-4 T13A10.10 Caenorhabditis elegans
WBGene00000006 aat-5 C55C2.5 Caenorhabditis elegans
WBGene00000008 aat-7 F54D12.3 Caenorhabditis elegans
WBGene00000019 abt-1 C24F3.5 Caenorhabditis elegans
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000024 abu-1 AC3.3 Caenorhabditis elegans
WBGene00000025 abu-2 F19G12.7 Caenorhabditis elegans
WBGene00000031 abu-8 C03A7.14 Caenorhabditis elegans
WBGene00000033 abu-10 F35A5.3 Caenorhabditis elegans
WBGene00000034 abu-11 T01D1.6 Caenorhabditis elegans
WBGene00000037 ace-3 Y48B6A.8 Caenorhabditis elegans
WBGene00000038 ace-4 Y48B6A.7 Caenorhabditis elegans
WBGene00000039 acn-1 C42D8.5 Caenorhabditis elegans
WBGene00000042 acr-2 K11G12.2 Caenorhabditis elegans
WBGene00000047 acr-8 ZC504.2 Caenorhabditis elegans
WBGene00000048 acr-9 C40C9.2 Caenorhabditis elegans
WBGene00000049 acr-10 R02E12.8 Caenorhabditis elegans
WBGene00000050 acr-11 D2092.3 Caenorhabditis elegans
WBGene00000051 acr-12 R01E6.4 Caenorhabditis elegans
WBGene00000059 acr-20 R06A4.10 Caenorhabditis elegans
WBGene00000060 acr-21 F27B3.2 Caenorhabditis elegans
WBGene00000061 lgc-11 F48E3.7 Caenorhabditis elegans
WBGene00000069 acy-2 C10F3.3 Caenorhabditis elegans
WBGene00000071 acy-4 T01C2.1 Caenorhabditis elegans
WBGene00000083 adt-2 F08C6.1 Caenorhabditis elegans
WBGene00000085 aex-2 T14B1.2 Caenorhabditis elegans
WBGene00000133 amt-1 C05E11.4 Caenorhabditis elegans
WBGene00000134 amt-2 F49E11.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The stage that begins when a C.elegans individual is fully-developed and has reached maturity. adult Ce WBls:0000041

2 Processes

Primary Identifier
WBbiopr:00000008
WBbiopr:00000039

0 Regulated By Gene

0 Regulated By Molecule