WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq was used. Fold change between the average of the four control replicates and the average of the four test replicates was used to calculate the significance using a negative binomial distribution. An adjusted P-value was calculated using the Benjamini-Hochberg method for multiple testing correction. Description  mRNAs that showed increased expression in csr-1(RNAi) animales comparing to in control RNAi animals. Set 2 transcripts were defined as adjusted p-value < 0.05 and fold change > 2.6.
Primary Identifier  WBPaper00046805:csr-1(RNAi)_upregulated_Set2

0 Anatomy Terms

780 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000044 acr-5 K03F8.2 Caenorhabditis elegans
WBGene00000055 acr-16 F25G6.3 Caenorhabditis elegans
WBGene00000057 acr-18 F28F8.1 Caenorhabditis elegans
WBGene00000242 bbs-2 F20D12.3 Caenorhabditis elegans
WBGene00000296 cat-2 B0432.5 Caenorhabditis elegans
WBGene00000389 cdc-25.4 R05H5.2 Caenorhabditis elegans
WBGene00000435 ceh-10 W03A3.1 Caenorhabditis elegans
WBGene00000562 cng-1 F14H8.6 Caenorhabditis elegans
WBGene00000629 col-52 D1007.2 Caenorhabditis elegans
WBGene00000658 col-83 F33A8.9 Caenorhabditis elegans
WBGene00000663 col-88 W05G11.3 Caenorhabditis elegans
WBGene00000729 col-156 F57B7.3 Caenorhabditis elegans
WBGene00000771 cpb-2 C30B5.3 Caenorhabditis elegans
WBGene00000878 cyn-2 ZK520.5 Caenorhabditis elegans
WBGene00000906 daf-10 F23B2.4 Caenorhabditis elegans
WBGene00000966 dhs-2 F55A12.4 Caenorhabditis elegans
WBGene00001063 dpy-1 M01E10.2 Caenorhabditis elegans
WBGene00001170 egl-1 F23B12.9 Caenorhabditis elegans
WBGene00001245 elo-7 F56H11.3 Caenorhabditis elegans
WBGene00001246 elo-8 Y47D3A.30 Caenorhabditis elegans
WBGene00001424 fis-1 F41G3.4 Caenorhabditis elegans
WBGene00001483 fog-3 C03C11.2 Caenorhabditis elegans
WBGene00001487 frk-1 T04B2.2 Caenorhabditis elegans
WBGene00001535 gcy-8 C49H3.1 Caenorhabditis elegans
WBGene00001553 gcy-33 F57F5.2 Caenorhabditis elegans
WBGene00001603 gln-2 K03H1.1 Caenorhabditis elegans
WBGene00001613 glr-2 B0280.12 Caenorhabditis elegans
WBGene00001623 glt-5 Y53C12A.2 Caenorhabditis elegans
WBGene00001663 gpa-1 T19C4.6 Caenorhabditis elegans
WBGene00001673 gpa-11 C16A11.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017641 csr-1 F20D12.1 Caenorhabditis elegans

0 Regulated By Molecule