WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Data were screened for differences of each treatment (Ag-MNP, sAg-MNP, and AgNO3) from control using one-way ANOVA with contrasts. The false discovery rate (FDR) threshold was set at 0.2 and the fold change was required to be greater than 1.5, and a P-value <= 0.05. The FDR of 0.2 was selected to balance the protection against false positives while minimizing the rate of false negatives. Using Partek, genes that were significantly different from control in at least one treatment were then analyzed using agglomerative hierarchical cluster analysis (HCA). HCA is a 2-Pass clustering method; the first pass is a K-means clustering and in the second pass the K-means clusters are joined by agglomerative clustering. Description  Transcripts that showed significantly altered expression after 48 hour exposure to AgNO3.
Primary Identifier  WBPaper00049311:AgNO3_regulated

0 Anatomy Terms

288 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000067 act-5 T25C8.2 Caenorhabditis elegans
WBGene00000171 aqp-3 Y69E1A.7 Caenorhabditis elegans
WBGene00000215 asp-2 T18H9.2 Caenorhabditis elegans
WBGene00000302 cav-2 C56A3.7 Caenorhabditis elegans
WBGene00000465 cpg-1 C07G2.1 Caenorhabditis elegans
WBGene00000560 cnc-6 Y46E12A.1 Caenorhabditis elegans
WBGene00000593 col-2 W01B6.7 Caenorhabditis elegans
WBGene00000609 col-20 F11G11.11 Caenorhabditis elegans
WBGene00000612 col-35 C15A11.1 Caenorhabditis elegans
WBGene00000613 col-36 C27H5.5 Caenorhabditis elegans
WBGene00000614 col-37 ZK863.2 Caenorhabditis elegans
WBGene00000622 col-45 F53G12.7 Caenorhabditis elegans
WBGene00000628 col-51 T28F2.8 Caenorhabditis elegans
WBGene00000659 col-84 K12D12.3 Caenorhabditis elegans
WBGene00000660 col-85 T21B4.2 Caenorhabditis elegans
WBGene00000688 col-114 D2024.8 Caenorhabditis elegans
WBGene00000697 col-123 W08D2.6 Caenorhabditis elegans
WBGene00000731 col-158 D2023.7 Caenorhabditis elegans
WBGene00000756 col-183 F02D10.1 Caenorhabditis elegans
WBGene00000830 ctl-1 Y54G11A.6 Caenorhabditis elegans
WBGene00000831 ctl-2 Y54G11A.5 Caenorhabditis elegans
WBGene00000851 cut-1 C47G2.1 Caenorhabditis elegans
WBGene00000868 cyb-3 T06E6.2 Caenorhabditis elegans
WBGene00001099 dsc-4 K02D7.4 Caenorhabditis elegans
WBGene00001320 ent-1 ZK809.4 Caenorhabditis elegans
WBGene00001397 fat-5 W06D12.3 Caenorhabditis elegans
WBGene00001423 fib-1 T01C3.7 Caenorhabditis elegans
WBGene00001477 fmo-2 K08C7.5 Caenorhabditis elegans
WBGene00001523 gbh-2 M05D6.7 Caenorhabditis elegans
WBGene00001598 glh-1 T21G5.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035

0 Processes

0 Regulated By Gene

1 Regulated By Molecule

Name Primary Identifier
Ag nanoparticles WBMol:00005288