WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 5, ugt-27-C28G1.2, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:ugt-27-C28G1.2

0 Anatomy Terms

101 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000012 abf-1 C50F2.9 Caenorhabditis elegans
WBGene00000171 aqp-3 Y69E1A.7 Caenorhabditis elegans
WBGene00000690 col-116 F17E9.1 Caenorhabditis elegans
WBGene00000989 dhs-26 ZK816.5 Caenorhabditis elegans
WBGene00001175 egl-6 C46F4.1 Caenorhabditis elegans
WBGene00003688 nhr-98 M02H5.6 Caenorhabditis elegans
WBGene00004997 spp-12 T22G5.7 Caenorhabditis elegans
WBGene00005040 sra-14 F35C5.2 Caenorhabditis elegans
WBGene00005105 srd-27 T26E4.12 Caenorhabditis elegans
WBGene00005120 srd-42 R04D3.7 Caenorhabditis elegans
WBGene00005131 srd-53 F13G3.2 Caenorhabditis elegans
WBGene00005133 srd-55 K02A2.2 Caenorhabditis elegans
WBGene00005189 srg-32 T21C9.7 Caenorhabditis elegans
WBGene00005292 srh-71 T10D4.5 Caenorhabditis elegans
WBGene00005408 srh-195 R52.7 Caenorhabditis elegans
WBGene00005446 srh-239 T26H5.3 Caenorhabditis elegans
WBGene00005528 sri-16 F15H9.4 Caenorhabditis elegans
WBGene00005548 sri-36 F33H12.5 Caenorhabditis elegans
WBGene00005550 sri-38 D2062.8 Caenorhabditis elegans
WBGene00005551 sri-39 F33H12.2 Caenorhabditis elegans
WBGene00005582 sri-70 Y61B8B.1 Caenorhabditis elegans
WBGene00005586 sri-74 F33H12.4 Caenorhabditis elegans
WBGene00005616 srj-29 F22B8.1 Caenorhabditis elegans
WBGene00005685 sru-22 F36G9.5 Caenorhabditis elegans
WBGene00005735 srv-24 Y73B6BL.10 Caenorhabditis elegans
WBGene00005780 srw-33 T26H5.5 Caenorhabditis elegans
WBGene00005814 srw-67 F18E3.2 Caenorhabditis elegans
WBGene00006175 str-124 T22H6.3 Caenorhabditis elegans
WBGene00006226 str-182 C12D8.12 Caenorhabditis elegans
WBGene00007140 cyp-29A4 B0331.1 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule