WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Description  Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at both embryonic and larval stages.
Primary Identifier  WBPaper00037950:coelomocytes_CoreEnriched
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
A free-floating spherical cell lying in the pseudocoelomic cavity of larvae and adult C. elegans which can endocytose many compounds, possibly for immune surveillance. There are six coelomocytes in adult hermaphrodites, and they display prominent cytoplasmic inclusions and vacuoles. coelomocyte   WBbt:0005751

49 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000455 ceh-34 C10G8.6 Caenorhabditis elegans
WBGene00000583 cof-2 C48E7.5 Caenorhabditis elegans
WBGene00000845 cup-4 C02C2.3 Caenorhabditis elegans
WBGene00002601 let-381 F26B1.7 Caenorhabditis elegans
WBGene00005759 srw-12 C41G6.2 Caenorhabditis elegans
WBGene00006845 unc-122 F11C3.2 Caenorhabditis elegans
WBGene00006942 wrk-1 F41D9.3 Caenorhabditis elegans
WBGene00007133 B0284.3 B0284.3 Caenorhabditis elegans
WBGene00007357 C06A12.3 C06A12.3 Caenorhabditis elegans
WBGene00007594 lgc-23 C15A7.1 Caenorhabditis elegans
WBGene00007929 dmd-10 C34D1.1 Caenorhabditis elegans
WBGene00008209 C49F5.5 C49F5.5 Caenorhabditis elegans
WBGene00008735 F13D2.1 F13D2.1 Caenorhabditis elegans
WBGene00009530 F38B2.3 F38B2.3 Caenorhabditis elegans
WBGene00009809 F47B8.8 F47B8.8 Caenorhabditis elegans
WBGene00010541 ttr-1 K03H1.6 Caenorhabditis elegans
WBGene00010994 lgc-25 R03E1.3 Caenorhabditis elegans
WBGene00010995 ceh-90 R03E1.4 Caenorhabditis elegans
WBGene00012135 T28F3.9 T28F3.9 Caenorhabditis elegans
WBGene00013514 Y73F4A.1 Y73F4A.1 Caenorhabditis elegans
WBGene00013855 cubn-1 ZC116.3 Caenorhabditis elegans
WBGene00016090 aexr-2 C25B8.7 Caenorhabditis elegans
WBGene00016207 C29E4.10 C29E4.10 Caenorhabditis elegans
WBGene00017335 F10D2.10 F10D2.10 Caenorhabditis elegans
WBGene00017530 mfsd-12 F16H11.1 Caenorhabditis elegans
WBGene00018850 gpx-8 F55A3.5 Caenorhabditis elegans
WBGene00018877 aman-1 F55D10.1 Caenorhabditis elegans
WBGene00019315 K02E7.11 K02E7.11 Caenorhabditis elegans
WBGene00020509 hex-1 T14F9.3 Caenorhabditis elegans
WBGene00020563 T19C3.5 T19C3.5 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003
  A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood. larva Ce WBls:0000023

0 Processes

0 Regulated By Gene

0 Regulated By Molecule