WormMine: ExpressionCluster WBPaper00037950:coelomocytes_larva_SelectivelyEnriched

• Algorithm: A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes.
• Description: Genes that show selective expression in a subset of cell types vs broadly expressed in many cell types. Correspond to 20% - 57% of enriched_genes for a given cell type.
• Primary Identifier: WBPaper00037950:coelomocytes_larva_SelectivelyEnriched

1 Anatomy Terms

Definition	Name	Synonym	Primary Identifier
A free-floating spherical cell lying in the pseudocoelomic cavity of larvae and adult C. elegans which can endocytose many compounds, possibly for immune surveillance. There are six coelomocytes in adult hermaphrodites, and they display prominent cytoplasmic inclusions and vacuoles.	coelomocyte		WBbt:0005751

66 Genes

WormBase Gene ID	Gene Name	Sequence Name	Organism
WBGene00000455	ceh-34	C10G8.6	Caenorhabditis elegans
WBGene00000845	cup-4	C02C2.3	Caenorhabditis elegans
WBGene00001456	flp-13	F33D4.3	Caenorhabditis elegans
WBGene00001772	gst-24	F37B1.1	Caenorhabditis elegans
WBGene00002601	let-381	F26B1.7	Caenorhabditis elegans
WBGene00005011	F26F4.8	F26F4.8	Caenorhabditis elegans
WBGene00006845	unc-122	F11C3.2	Caenorhabditis elegans
WBGene00006942	wrk-1	F41D9.3	Caenorhabditis elegans
WBGene00007633	C16D2.1	C16D2.1	Caenorhabditis elegans
WBGene00008779	F14B4.1	F14B4.1	Caenorhabditis elegans
WBGene00009075	F23B2.7	F23B2.7	Caenorhabditis elegans
WBGene00010541	ttr-1	K03H1.6	Caenorhabditis elegans
WBGene00010821	M01G12.7	M01G12.7	Caenorhabditis elegans
WBGene00010825	M01G12.14	M01G12.14	Caenorhabditis elegans
WBGene00010994	lgc-25	R03E1.3	Caenorhabditis elegans
WBGene00011798	T16G1.4	T16G1.4	Caenorhabditis elegans
WBGene00011805	T16G12.4	T16G12.4	Caenorhabditis elegans
WBGene00012135	T28F3.9	T28F3.9	Caenorhabditis elegans
WBGene00012332	rpi-1	W07G1.5	Caenorhabditis elegans
WBGene00013514	Y73F4A.1	Y73F4A.1	Caenorhabditis elegans
WBGene00015419	srsx-18	C04E6.2	Caenorhabditis elegans
WBGene00015816	C16A11.3	C16A11.3	Caenorhabditis elegans
WBGene00015817	C16A11.4	C16A11.4	Caenorhabditis elegans
WBGene00016090	aexr-2	C25B8.7	Caenorhabditis elegans
WBGene00016212	nyn-3	C29F5.3	Caenorhabditis elegans
WBGene00016997	cebp-1	D1005.3	Caenorhabditis elegans
WBGene00017530	mfsd-12	F16H11.1	Caenorhabditis elegans
WBGene00017611	F19G12.3	F19G12.3	Caenorhabditis elegans
WBGene00018850	gpx-8	F55A3.5	Caenorhabditis elegans
WBGene00019315	K02E7.11	K02E7.11	Caenorhabditis elegans

1 Life Stages

Remark	Definition	Other Name	Public Name	Primary Identifier
	A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood.		larva Ce	WBls:0000023

0 Processes

0 Regulated By Gene

0 Regulated By Molecule