WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed genes between wild type and knockouts were explored using DESeq2 R package (v.1.20.0) considering a threshold of adjusted p value < 0.01. Description  Transcripts that showed significantly increased expression in nfki-1(cer1) animals at L1 larva stage, comparing to in N2 animals.
Primary Identifier  WBPaper00060445:nfki-1(cer1)_upregulated_L1
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0 Anatomy Terms

125 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000008 aat-7 F54D12.3 Caenorhabditis elegans
WBGene00000627 col-50 T28F2.6 Caenorhabditis elegans
WBGene00000782 cpr-2 F36D3.9 Caenorhabditis elegans
WBGene00001156 ech-7 Y105E8A.4 Caenorhabditis elegans
WBGene00001240 elo-2 F11E6.5 Caenorhabditis elegans
WBGene00001243 elo-5 F41H10.7 Caenorhabditis elegans
WBGene00001244 elo-6 F41H10.8 Caenorhabditis elegans
WBGene00001423 fib-1 T01C3.7 Caenorhabditis elegans
WBGene00001642 gly-17 T15D6.3 Caenorhabditis elegans
WBGene00002021 hsp-17 F52E1.7 Caenorhabditis elegans
WBGene00003093 lys-4 F58B3.1 Caenorhabditis elegans
WBGene00003572 ncx-7 C07A9.11 Caenorhabditis elegans
WBGene00003611 nhr-12 R04B5.4 Caenorhabditis elegans
WBGene00004062 pmp-5 T10H9.5 Caenorhabditis elegans
WBGene00005032 sra-6 AH6.10 Caenorhabditis elegans
WBGene00005037 sra-11 F44F4.13 Caenorhabditis elegans
WBGene00005188 srg-31 T07H8.5 Caenorhabditis elegans
WBGene00005199 srg-42 T19C4.9 Caenorhabditis elegans
WBGene00005577 sri-65 F13A7.8 Caenorhabditis elegans
WBGene00005623 srj-39 F38H12.1 Caenorhabditis elegans
WBGene00005809 srw-62 T05A6.6 Caenorhabditis elegans
WBGene00005835 srw-88 T06G6.7 Caenorhabditis elegans
WBGene00005955 srx-64 K07C6.7 Caenorhabditis elegans
WBGene00007203 best-1 B0564.3 Caenorhabditis elegans
WBGene00007482 C09F12.2 C09F12.2 Caenorhabditis elegans
WBGene00007506 fbxc-58 C10C5.2 Caenorhabditis elegans
WBGene00007836 phdh-1 C31C9.2 Caenorhabditis elegans
WBGene00007926 C34C12.7 C34C12.7 Caenorhabditis elegans
WBGene00008199 C49C3.9 C49C3.9 Caenorhabditis elegans
WBGene00008560 pho-13 F07H5.9 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007877 nfki-1 C33A11.1 Caenorhabditis elegans

0 Regulated By Molecule