WormMine: ExpressionCluster WBPaper00037950:intestine_larva_enriched

• Algorithm: A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes.
• Description: Genes significantly enriched (> 2x, FDR < 5%) in a particular cell-type versus a reference sample of all cells at the same stage.
• Primary Identifier: WBPaper00037950:intestine_larva_enriched

1 Anatomy Terms

Definition	Name	Synonym	Primary Identifier
A chain of very large cuboidal cells forming a wide central lumen in which food arrives from the posterior pharynx, is digested, and from which waste products proceed to the rectum. Intestinal rings form in groups of two and four cells surrounding the common lumen; thus the epithelium is only one cell deep at any point, with neighboring cells firmly secured to their neighbors by apical adherens junctions. These cells have very large nuclei and many large vacuoles, yolk granules, and other inclusions; the latter increase in number and electron density as the animal ages.	intestine	gut	WBbt:0005772

946 Genes

WormBase Gene ID	Gene Name	Sequence Name	Organism
WBGene00000007	aat-6	T11F9.4	Caenorhabditis elegans
WBGene00000084	aex-1	D2030.10	Caenorhabditis elegans
WBGene00000139	amx-3	F25C8.2	Caenorhabditis elegans
WBGene00000159	aps-1	F29G9.3	Caenorhabditis elegans
WBGene00000169	aqp-1	F32A5.5	Caenorhabditis elegans
WBGene00000178	aqp-10	ZK1321.3	Caenorhabditis elegans
WBGene00000179	aqp-11	ZK525.2	Caenorhabditis elegans
WBGene00000202	exos-4.2	Y6D11A.1	Caenorhabditis elegans
WBGene00000203	arx-5	Y37D8A.1	Caenorhabditis elegans
WBGene00000212	asm-2	ZK455.4	Caenorhabditis elegans
WBGene00000235	baf-1	B0464.7	Caenorhabditis elegans
WBGene00000266	bre-1	C53B4.7	Caenorhabditis elegans
WBGene00000298	cat-4	F32G8.6	Caenorhabditis elegans
WBGene00000302	cav-2	C56A3.7	Caenorhabditis elegans
WBGene00000412	cdr-1	F35E8.11	Caenorhabditis elegans
WBGene00000458	ceh-37	C37E2.5	Caenorhabditis elegans
WBGene00000522	clc-1	C09F12.1	Caenorhabditis elegans
WBGene00000539	cln-3.1	F07B10.1	Caenorhabditis elegans
WBGene00000541	cln-3.3	ZC190.1	Caenorhabditis elegans
WBGene00000782	cpr-2	F36D3.9	Caenorhabditis elegans
WBGene00000783	cpr-3	T10H4.12	Caenorhabditis elegans
WBGene00000785	cpr-5	W07B8.5	Caenorhabditis elegans
WBGene00000787	cps-6	C41D11.8	Caenorhabditis elegans
WBGene00000789	cpz-2	M04G12.2	Caenorhabditis elegans
WBGene00000799	crn-6	K04H4.6	Caenorhabditis elegans
WBGene00000971	dhs-7	E04F6.7	Caenorhabditis elegans
WBGene00000977	dhs-14	R05D8.8	Caenorhabditis elegans
WBGene00000981	dhs-18	C45B11.3	Caenorhabditis elegans
WBGene00000988	dhs-25	F09E10.3	Caenorhabditis elegans
WBGene00000991	dhs-28	M03A8.1	Caenorhabditis elegans

1 Life Stages

Remark	Definition	Other Name	Public Name	Primary Identifier
	A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood.		larva Ce	WBls:0000023

0 Processes

0 Regulated By Gene

0 Regulated By Molecule