WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential expression analysis was performed using DESeq2 v1.6.3 in R version 3.2.3. All analyses were performed with genes that had average expression level above 1 RPKM (fragments per kilobase per million, as calculated by Cufflinks). Description  Transcripts that showed significantly decreased expression (fold change > 2, adjusted p-value < 0.05) in RB2301[cec-4(ok3124)] injected with vector RNAi, comparing to control animals (N2 injected with vector RNAi).
Primary Identifier  WBPaper00050193:cec-4(ok3124)_downregulated_L1

0 Anatomy Terms

240 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000008 aat-7 F54D12.3 Caenorhabditis elegans
WBGene00000098 air-1 K07C11.2 Caenorhabditis elegans
WBGene00000099 air-2 B0207.4 Caenorhabditis elegans
WBGene00000257 bmk-1 F23B12.8 Caenorhabditis elegans
WBGene00000264 brc-1 C36A4.8 Caenorhabditis elegans
WBGene00000265 brd-1 K04C2.4 Caenorhabditis elegans
WBGene00000275 bub-1 R06C7.8 Caenorhabditis elegans
WBGene00000387 cdc-25.2 F16B4.8 Caenorhabditis elegans
WBGene00000405 cdk-1 T05G5.3 Caenorhabditis elegans
WBGene00000411 cdl-1 R06F6.1 Caenorhabditis elegans
WBGene00000413 cdt-1 Y54E10A.15 Caenorhabditis elegans
WBGene00000498 chk-1 Y39H10A.7 Caenorhabditis elegans
WBGene00000647 col-71 Y49F6B.10 Caenorhabditis elegans
WBGene00000794 crn-1 Y47G6A.8 Caenorhabditis elegans
WBGene00000804 csc-1 Y48E1B.12 Caenorhabditis elegans
WBGene00000865 cyb-1 ZC168.4 Caenorhabditis elegans
WBGene00000868 cyb-3 T06E6.2 Caenorhabditis elegans
WBGene00000875 cyk-4 K08E3.6 Caenorhabditis elegans
WBGene00000883 cyn-7 Y75B12B.2 Caenorhabditis elegans
WBGene00000990 dhs-27 C04F6.5 Caenorhabditis elegans
WBGene00001002 div-1 R01H10.1 Caenorhabditis elegans
WBGene00001016 dna-2 F43G6.1 Caenorhabditis elegans
WBGene00001051 cks-1 C09G4.3 Caenorhabditis elegans
WBGene00001372 exo-3 R09B3.1 Caenorhabditis elegans
WBGene00001427 fkb-2 Y18D10A.19 Caenorhabditis elegans
WBGene00001511 fzy-1 ZK177.6 Caenorhabditis elegans
WBGene00001688 gpr-1 F22B7.13 Caenorhabditis elegans
WBGene00001689 gpr-2 C38C10.4 Caenorhabditis elegans
WBGene00001829 hcp-1 ZK1055.1 Caenorhabditis elegans
WBGene00001830 hcp-2 T06E4.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017990 cec-4 F32E10.2 Caenorhabditis elegans

0 Regulated By Molecule