WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A Mann-Whitney U test with an empirical background model and FDR correction for multiple testing was used to detect expressed transcripts (Benjamini and Hochberg 1995). Genes and TARs with an FDR <= 0.05 were reported as expressed above background. Authors detected differentially expressed transcripts using a method based on linear models. Genes and TARs were called differentially expressed if the FDR was <= 0.05 and the fold change (FC) >= 2.0. To more strictly correct for potential false-positives resulting from multiple sample comparisons, authors divided individual FDR estimates by the number of samplesor sample comparisons, respectively. This resulted in an adjusted FDR of 1.3 * 0.0001 for expression above background and of 7.4 * 0.0001 for differential expression. Authors called genes selectively enriched in a given tissue if they met the following requirements: (1) enriched expression in a given tissue (FDR <= 0.05 and FC >= 2.0), (2) fold change versus reference among the upper 40% of the positive FC range observed for this gene across all tissues, and (3) fold-change entropy among the lower 40% of the distribution observed for all genes. Description  Genes that show selective expression in a subset of cell types vs broadly expressed in many cell types. Correspond to 20% - 57% of enriched_genes for a given cell type.
Primary Identifier  WBPaper00037950:A-class-motor-neurons_larva_SelectivelyEnriched
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2 Anatomy Terms

Definition Name Synonym Primary Identifier
Neuron class of nine ventral cord motor neuron, innervates dorsal muscle. DA neuron   WBbt:0005278
Neuron class of twelve motoneurons, distributed along the ventral cord, which innervate ventral body muscles. VA neuron   WBbt:0005339

279 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000002 aat-1 F27C8.1 Caenorhabditis elegans
WBGene00000036 ace-2 Y44E3A.2 Caenorhabditis elegans
WBGene00000037 ace-3 Y48B6A.8 Caenorhabditis elegans
WBGene00000042 acr-2 K11G12.2 Caenorhabditis elegans
WBGene00000053 acr-14 T05C12.2 Caenorhabditis elegans
WBGene00000058 acr-19 C31H5.3 Caenorhabditis elegans
WBGene00000069 acy-2 C10F3.3 Caenorhabditis elegans
WBGene00000279 cah-1 F54D8.4 Caenorhabditis elegans
WBGene00000301 cav-1 T13F2.8 Caenorhabditis elegans
WBGene00000431 ceh-6 K02B12.1 Caenorhabditis elegans
WBGene00000501 cho-1 C48D1.3 Caenorhabditis elegans
WBGene00000524 clc-3 ZK563.4 Caenorhabditis elegans
WBGene00000527 cle-1 C36B1.1 Caenorhabditis elegans
WBGene00000775 cpin-1 F38E11.3 Caenorhabditis elegans
WBGene00000857 cwn-1 K10B4.6 Caenorhabditis elegans
WBGene00000950 deg-1 C47C12.6 Caenorhabditis elegans
WBGene00000952 del-1 E02H4.1 Caenorhabditis elegans
WBGene00001174 egl-5 C08C3.1 Caenorhabditis elegans
WBGene00001202 egl-36 R07A4.1 Caenorhabditis elegans
WBGene00001249 elt-1 W09C2.1 Caenorhabditis elegans
WBGene00001368 exc-7 F35H8.5 Caenorhabditis elegans
WBGene00001373 exp-1 H35N03.1 Caenorhabditis elegans
WBGene00001456 flp-13 F33D4.3 Caenorhabditis elegans
WBGene00001475 fmi-1 F15B9.7 Caenorhabditis elegans
WBGene00001512 gab-1 ZC482.1 Caenorhabditis elegans
WBGene00001537 gcy-11 C30G4.3 Caenorhabditis elegans
WBGene00001586 lgc-57 C09G5.1 Caenorhabditis elegans
WBGene00001664 gpa-2 F38E1.5 Caenorhabditis elegans
WBGene00001820 ham-1 F53B2.6 Caenorhabditis elegans
WBGene00001987 hot-2 Y39B6A.48 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  A developmental life stage of the nematode Caenorhabditis elegans that occurs from egg hatching until adulthood. larva Ce WBls:0000023

0 Processes

0 Regulated By Gene

0 Regulated By Molecule