WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For each gene in each microarray hybridization experiment, the ratio of RNA levels from the two samples was transformed into a log2 value and the mean log2 ratio was calculated. The log2 ratios were normalized by print-tip Loess normalization (Dudoit and Yang, 2002). All genes with a false discovery rate of <= 5% (q <= 0.05) (Storey and Tibshirani, 2003) and a mean fold-change ratio of >= 1.5 were selected for further analysis. Description  Genes that were downregulated in lin-35.
Primary Identifier  WBPaper00038168:lin-35_downregulated

0 Anatomy Terms

136 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000031 abu-8 C03A7.14 Caenorhabditis elegans
WBGene00000215 asp-2 T18H9.2 Caenorhabditis elegans
WBGene00000411 cdl-1 R06F6.1 Caenorhabditis elegans
WBGene00000606 col-17 F11G11.10 Caenorhabditis elegans
WBGene00000695 col-121 F56D5.1 Caenorhabditis elegans
WBGene00000702 col-128 F12F6.9 Caenorhabditis elegans
WBGene00000749 col-176 ZC373.7 Caenorhabditis elegans
WBGene00000767 coq-8 C35D10.4 Caenorhabditis elegans
WBGene00000967 dhs-3 T02E1.5 Caenorhabditis elegans
WBGene00001059 dpf-6 F44B9.1 Caenorhabditis elegans
WBGene00001067 dpy-5 F27C1.8 Caenorhabditis elegans
WBGene00001244 elo-6 F41H10.8 Caenorhabditis elegans
WBGene00001432 fkb-7 B0511.1 Caenorhabditis elegans
WBGene00001500 ftn-1 C54F6.14 Caenorhabditis elegans
WBGene00001503 fum-1 H14A12.2 Caenorhabditis elegans
WBGene00001520 gas-1 K09A9.5 Caenorhabditis elegans
WBGene00001774 gst-26 Y53F4B.29 Caenorhabditis elegans
WBGene00001789 gst-41 R13D7.7 Caenorhabditis elegans
WBGene00002139 inx-17 R12E2.4 Caenorhabditis elegans
WBGene00002183 kat-1 T02G5.8 Caenorhabditis elegans
WBGene00002258 lbp-6 W02D3.5 Caenorhabditis elegans
WBGene00003474 mtl-2 T08G5.10 Caenorhabditis elegans
WBGene00003580 ndx-3 Y38A8.1 Caenorhabditis elegans
WBGene00003658 nhr-68 H12C20.3 Caenorhabditis elegans
WBGene00003916 par-1 H39E23.1 Caenorhabditis elegans
WBGene00003995 pgp-1 K08E7.9 Caenorhabditis elegans
WBGene00004062 pmp-5 T10H9.5 Caenorhabditis elegans
WBGene00004099 abu-15 C03A7.4 Caenorhabditis elegans
WBGene00004425 rpl-13 C32E8.2 Caenorhabditis elegans
WBGene00004698 rsp-1 W02B12.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003020 lin-35 C32F10.2 Caenorhabditis elegans

0 Regulated By Molecule