WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed transcripts were obtainedusing the RNA-Seq Differential Expression analysis pipeline in CLC, which utilizes a negative binomal GLM model. Genes were scored as differentially expressed > 2-fold difference and FDR p value < .05 compared to control. Description  Transcripts that showed significantly increased expression in unc-4(e120) VA neurons comparing to in wild type VA neurons.
Primary Identifier  WBPaper00062095:unc-4(e120)_upregulated_VA-neuron
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
Neuron class of twelve motoneurons, distributed along the ventral cord, which innervate ventral body muscles. VA neuron   WBbt:0005339

214 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000035 ace-1 W09B12.1 Caenorhabditis elegans
WBGene00000054 acr-15 F25G6.4 Caenorhabditis elegans
WBGene00000055 acr-16 F25G6.3 Caenorhabditis elegans
WBGene00000174 aqp-6 C32C4.2 Caenorhabditis elegans
WBGene00000273 brp-1 Y79H2A.1 Caenorhabditis elegans
WBGene00000387 cdc-25.2 F16B4.8 Caenorhabditis elegans
WBGene00000436 ceh-12 F33D11.4 Caenorhabditis elegans
WBGene00000447 ceh-24 F55B12.1 Caenorhabditis elegans
WBGene00000448 pros-1 K12H4.1 Caenorhabditis elegans
WBGene00000452 ceh-31 C33D12.1 Caenorhabditis elegans
WBGene00000455 ceh-34 C10G8.6 Caenorhabditis elegans
WBGene00000468 ces-1 F43G9.11 Caenorhabditis elegans
WBGene00000583 cof-2 C48E7.5 Caenorhabditis elegans
WBGene00000703 col-129 M18.1 Caenorhabditis elegans
WBGene00000845 cup-4 C02C2.3 Caenorhabditis elegans
WBGene00000903 daf-7 B0412.2 Caenorhabditis elegans
WBGene00000998 dig-1 K07E12.1 Caenorhabditis elegans
WBGene00001366 exc-5 C33D9.1 Caenorhabditis elegans
WBGene00001452 flp-9 C36H8.3 Caenorhabditis elegans
WBGene00001453 flp-10 T06C10.4 Caenorhabditis elegans
WBGene00001454 flp-11 K02G10.4 Caenorhabditis elegans
WBGene00001461 flp-18 Y48D7A.2 Caenorhabditis elegans
WBGene00001537 gcy-11 C30G4.3 Caenorhabditis elegans
WBGene00001541 gcy-15 ZC239.7 Caenorhabditis elegans
WBGene00001546 gcy-21 F22E5.3 Caenorhabditis elegans
WBGene00001613 glr-2 B0280.12 Caenorhabditis elegans
WBGene00001664 gpa-2 F38E1.5 Caenorhabditis elegans
WBGene00001803 lite-1 C14F11.3 Caenorhabditis elegans
WBGene00001858 hil-7 C01B10.5 Caenorhabditis elegans
WBGene00001986 hot-1 F43D2.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006744 unc-4 F26C11.2 Caenorhabditis elegans

0 Regulated By Molecule