WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  BRB Array Tools were used to identify genes with statistically significant variation in expression. The probability threshold was set at a maximum of 0.05 (p-value <= 0.05) for genes to be considered statistically differentially expressed in wild-type and mutant populations. Genes with a signal variation of 1.5-fold or greater were selected for subsequent experiments. To reduce false discoveries, a class comparison test was conducted using a multivariate per mutation test with a confidence level of 97% (L1 analysis) and 90% (adults). Description  Genes that showed significantly decreased expression in daf-19(m86);daf-12(sa204) comparing to in daf-12(sa204), at 3-fold embryo stage.
Primary Identifier  WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
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0 Anatomy Terms

570 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000058 acr-19 C31H5.3 Caenorhabditis elegans
WBGene00000073 add-2 F57F5.4 Caenorhabditis elegans
WBGene00000188 arl-3 F19H8.3 Caenorhabditis elegans
WBGene00000193 arl-6 C38D4.8 Caenorhabditis elegans
WBGene00000241 bbs-1 Y105E8A.5 Caenorhabditis elegans
WBGene00000242 bbs-2 F20D12.3 Caenorhabditis elegans
WBGene00000244 bbs-8 T25F10.5 Caenorhabditis elegans
WBGene00000255 bli-5 F45G2.5 Caenorhabditis elegans
WBGene00000373 cyp-14A5 F08F3.7 Caenorhabditis elegans
WBGene00000484 che-2 F38G1.1 Caenorhabditis elegans
WBGene00000485 che-3 F18C12.1 Caenorhabditis elegans
WBGene00000490 che-11 C27A7.4 Caenorhabditis elegans
WBGene00000492 che-13 F59C6.7 Caenorhabditis elegans
WBGene00000616 col-39 C09G5.4 Caenorhabditis elegans
WBGene00000633 col-56 T08B2.2 Caenorhabditis elegans
WBGene00000634 col-58 F26B1.4 Caenorhabditis elegans
WBGene00000656 col-80 C09G5.5 Caenorhabditis elegans
WBGene00000666 col-91 F09G8.6 Caenorhabditis elegans
WBGene00000700 col-126 F54D1.2 Caenorhabditis elegans
WBGene00000718 col-145 B0222.7 Caenorhabditis elegans
WBGene00000719 col-146 T06E4.6 Caenorhabditis elegans
WBGene00000729 col-156 F57B7.3 Caenorhabditis elegans
WBGene00000732 col-159 F57B1.3 Caenorhabditis elegans
WBGene00000733 col-160 F57B1.4 Caenorhabditis elegans
WBGene00000734 col-161 C50B6.4 Caenorhabditis elegans
WBGene00000785 cpr-5 W07B8.5 Caenorhabditis elegans
WBGene00000835 cuc-1 ZK652.11 Caenorhabditis elegans
WBGene00000885 cyn-9 T27D1.1 Caenorhabditis elegans
WBGene00000906 daf-10 F23B2.4 Caenorhabditis elegans
WBGene00000914 daf-19 F33H1.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The C. elegans life stage spanning 520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage. 3-fold embryo Ce WBls:0000020

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000914 daf-19 F33H1.1 Caenorhabditis elegans

0 Regulated By Molecule