WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differentially expressed genes between wild type and knockouts were explored using DESeq2 R package (v.1.20.0) considering a threshold of adjusted p value < 0.01. Description  Transcripts that showed significantly decreased expression in ikb-1(nr2027) animals at L1 larva stage, comparing to in N2 animals.
Primary Identifier  WBPaper00060445:ikb-1(nr2027)_downregulated_L1

0 Anatomy Terms

143 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000033 abu-10 F35A5.3 Caenorhabditis elegans
WBGene00000109 alh-3 F36H1.6 Caenorhabditis elegans
WBGene00000461 ceh-40 F17A2.5 Caenorhabditis elegans
WBGene00000634 col-58 F26B1.4 Caenorhabditis elegans
WBGene00000687 col-113 C34D4.15 Caenorhabditis elegans
WBGene00000699 col-125 C29F4.1 Caenorhabditis elegans
WBGene00000714 col-141 T15B7.5 Caenorhabditis elegans
WBGene00000727 col-154 F55C10.2 Caenorhabditis elegans
WBGene00000728 col-155 F55C10.3 Caenorhabditis elegans
WBGene00001430 fkb-5 C50F2.6 Caenorhabditis elegans
WBGene00001460 flp-17 C52D10.11 Caenorhabditis elegans
WBGene00001782 gst-34 Y1H11.1 Caenorhabditis elegans
WBGene00001933 his-59 F55G1.2 Caenorhabditis elegans
WBGene00001935 his-61 F55G1.10 Caenorhabditis elegans
WBGene00001936 his-62 F55G1.3 Caenorhabditis elegans
WBGene00001938 his-64 F22B3.1 Caenorhabditis elegans
WBGene00001942 his-68 T23D8.6 Caenorhabditis elegans
WBGene00002069 ikb-1 C04F12.3 Caenorhabditis elegans
WBGene00002112 ins-29 ZC334.10 Caenorhabditis elegans
WBGene00002116 ins-33 W09C5.4 Caenorhabditis elegans
WBGene00002211 kin-30 M01B2.1 Caenorhabditis elegans
WBGene00003542 nas-23 R10H1.5 Caenorhabditis elegans
WBGene00003742 nlp-4 F59C6.6 Caenorhabditis elegans
WBGene00003837 oat-1 T01B11.7 Caenorhabditis elegans
WBGene00003842 oct-1 F52F12.1 Caenorhabditis elegans
WBGene00003862 old-1 C08H9.5 Caenorhabditis elegans
WBGene00003991 pfn-3 K03E6.6 Caenorhabditis elegans
WBGene00005087 srd-9 T09D3.1 Caenorhabditis elegans
WBGene00005149 sre-1 B0495.1 Caenorhabditis elegans
WBGene00005261 srh-38 C31B8.11 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002069 ikb-1 C04F12.3 Caenorhabditis elegans

0 Regulated By Molecule