WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 207, AFFX-BioB-3_at-AFFX-BioB-5_at, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:AFFX-BioB-3_at-AFFX-BioB-5_at

0 Anatomy Terms

27 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000499 chk-2 Y60A3A.12 Caenorhabditis elegans
WBGene00000820 csp-2 Y73B6BL.7 Caenorhabditis elegans
WBGene00003404 mpz-1 C52A11.4 Caenorhabditis elegans
WBGene00005474 srh-268 C54F6.1 Caenorhabditis elegans
WBGene00005628 srj-49 T03D3.12 Caenorhabditis elegans
WBGene00008056 nhr-164 C41G6.5 Caenorhabditis elegans
WBGene00009332 F32D8.8 F32D8.8 Caenorhabditis elegans
WBGene00013287 Y57A10C.9 Y57A10C.9 Caenorhabditis elegans
WBGene00013938 ZK218.4 ZK218.4 Caenorhabditis elegans
WBGene00016324 acs-24 C32E8.6 Caenorhabditis elegans
WBGene00017063 mctp-1 D2092.1 Caenorhabditis elegans
WBGene00021284 Y24D9A.6 Y24D9A.6 Caenorhabditis elegans
WBGene00022061 Y67D8B.1 Y67D8B.1 Caenorhabditis elegans
WBGene00022874 nep-25 ZK1248.1 Caenorhabditis elegans
WBGene00044441 Y119C1B.11 Y119C1B.11 Caenorhabditis elegans
WBGene00018582 F48A9.2 F48A9.2 Caenorhabditis elegans
WBGene00015826 math-12 C16C4.2 Caenorhabditis elegans
WBGene00018992 trpl-1 F56F11.5 Caenorhabditis elegans
WBGene00022095 Y69A2AR.24 Y69A2AR.24 Caenorhabditis elegans
WBGene00009954 F53B2.1 F53B2.1 Caenorhabditis elegans
WBGene00019389 irld-40 K04F1.10 Caenorhabditis elegans
WBGene00010095 F55C5.6 F55C5.6 Caenorhabditis elegans
WBGene00009972 oac-33 F53C11.2 Caenorhabditis elegans
WBGene00011851 clec-23 T20B3.8 Caenorhabditis elegans
WBGene00013615 fbxa-110 Y102A5C.8 Caenorhabditis elegans
WBGene00013341 Y59A8A.7 Y59A8A.7 Caenorhabditis elegans
WBGene00011210 R10E8.4 R10E8.4 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule