WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly increased expression in dpl-1(n2994) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:dpl-1(n2994)_upregulated

0 Anatomy Terms

210 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000098 air-1 K07C11.2 Caenorhabditis elegans
WBGene00000099 air-2 B0207.4 Caenorhabditis elegans
WBGene00000257 bmk-1 F23B12.8 Caenorhabditis elegans
WBGene00000264 brc-1 C36A4.8 Caenorhabditis elegans
WBGene00000265 brd-1 K04C2.4 Caenorhabditis elegans
WBGene00000267 bre-2 Y39E4B.9 Caenorhabditis elegans
WBGene00000520 cku-80 R07E5.8 Caenorhabditis elegans
WBGene00000592 coh-3 F08H9.1 Caenorhabditis elegans
WBGene00000770 cpb-1 C40H1.1 Caenorhabditis elegans
WBGene00000864 cya-2 F59H6.7 Caenorhabditis elegans
WBGene00000871 cye-1 C37A2.4 Caenorhabditis elegans
WBGene00001016 dna-2 F43G6.1 Caenorhabditis elegans
WBGene00001046 dnj-28 Y54E10BL.4 Caenorhabditis elegans
WBGene00001061 dpl-1 T23G7.1 Caenorhabditis elegans
WBGene00001110 duo-1 F38B7.5 Caenorhabditis elegans
WBGene00001161 efl-1 Y102A5C.18 Caenorhabditis elegans
WBGene00001372 exo-3 R09B3.1 Caenorhabditis elegans
WBGene00001511 fzy-1 ZK177.6 Caenorhabditis elegans
WBGene00001598 glh-1 T21G5.3 Caenorhabditis elegans
WBGene00001606 gln-5 F26D10.10 Caenorhabditis elegans
WBGene00001661 gop-2 C34E10.2 Caenorhabditis elegans
WBGene00001688 gpr-1 F22B7.13 Caenorhabditis elegans
WBGene00001689 gpr-2 C38C10.4 Caenorhabditis elegans
WBGene00001862 him-3 ZK381.1 Caenorhabditis elegans
WBGene00001869 him-10 R12B2.4 Caenorhabditis elegans
WBGene00002068 ify-1 C27A2.3 Caenorhabditis elegans
WBGene00002143 inx-21 Y47G6A.1 Caenorhabditis elegans
WBGene00002144 inx-22 Y47G6A.2 Caenorhabditis elegans
WBGene00002231 knl-1 C02F5.1 Caenorhabditis elegans
WBGene00002297 ect-2 T19E10.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001061 dpl-1 T23G7.1 Caenorhabditis elegans

0 Regulated By Molecule