WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 242, fbxa-154_11499-Y44A6D.1, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:fbxa-154_11499-Y44A6D.1

0 Anatomy Terms

62 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000427 ced-13 R09F10.9 Caenorhabditis elegans
WBGene00001119 dyf-3 C04C3.5 Caenorhabditis elegans
WBGene00005299 srh-78 DC2.2 Caenorhabditis elegans
WBGene00005592 srj-4 C27A7.7 Caenorhabditis elegans
WBGene00005748 srw-1 Y75B12B.7 Caenorhabditis elegans
WBGene00005938 srx-47 E02C12.3 Caenorhabditis elegans
WBGene00006065 sto-3 F52D10.5 Caenorhabditis elegans
WBGene00006189 str-141 F47G9.2 Caenorhabditis elegans
WBGene00006244 str-211 C02E7.13 Caenorhabditis elegans
WBGene00006279 str-253 F41B5.8 Caenorhabditis elegans
WBGene00006731 uev-2 F56D2.4 Caenorhabditis elegans
WBGene00007723 C25F9.2 C25F9.2 Caenorhabditis elegans
WBGene00008144 gasr-8 C47E8.6 Caenorhabditis elegans
WBGene00008883 F16B12.7 F16B12.7 Caenorhabditis elegans
WBGene00010700 nipi-3 K09A9.1 Caenorhabditis elegans
WBGene00011341 T01G5.6 T01G5.6 Caenorhabditis elegans
WBGene00012242 srt-39 W04D2.2 Caenorhabditis elegans
WBGene00012616 dct-14 Y38H6C.3 Caenorhabditis elegans
WBGene00012624 fbxa-150 Y38H6C.11 Caenorhabditis elegans
WBGene00014193 nhr-247 ZK1037.5 Caenorhabditis elegans
WBGene00014196 ZK1053.1 ZK1053.1 Caenorhabditis elegans
WBGene00015252 B0546.5 B0546.5 Caenorhabditis elegans
WBGene00016253 C30E1.4 C30E1.4 Caenorhabditis elegans
WBGene00016551 C40A11.8 C40A11.8 Caenorhabditis elegans
WBGene00016639 C44B12.6 C44B12.6 Caenorhabditis elegans
WBGene00016834 sre-50 C50E10.11 Caenorhabditis elegans
WBGene00017024 D1022.5 D1022.5 Caenorhabditis elegans
WBGene00017898 F28C10.3 F28C10.3 Caenorhabditis elegans
WBGene00018842 F54H12.2 F54H12.2 Caenorhabditis elegans
WBGene00021435 Y39A3A.4 Y39A3A.4 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule