WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 144, 183712_at-srbc-74_8864, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:183712_at-srbc-74_8864

0 Anatomy Terms

97 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001150 ech-1.1 C29F3.1 Caenorhabditis elegans
WBGene00001551 gcy-31 T07D1.1 Caenorhabditis elegans
WBGene00004036 plc-1 F31B12.1 Caenorhabditis elegans
WBGene00005068 srb-3 C27D6.8 Caenorhabditis elegans
WBGene00005202 srg-45 C51F7.2 Caenorhabditis elegans
WBGene00005261 srh-38 C31B8.11 Caenorhabditis elegans
WBGene00005418 srh-208 C43D7.6 Caenorhabditis elegans
WBGene00005612 srj-24 C05E4.11 Caenorhabditis elegans
WBGene00005613 srj-25 C05E4.10 Caenorhabditis elegans
WBGene00005766 srw-19 T10H4.8 Caenorhabditis elegans
WBGene00005809 srw-62 T05A6.6 Caenorhabditis elegans
WBGene00005823 srw-76 W06G6.6 Caenorhabditis elegans
WBGene00005917 srx-26 R05D8.4 Caenorhabditis elegans
WBGene00005945 srx-54 Y102A5C.22 Caenorhabditis elegans
WBGene00006083 str-15 T08G3.1 Caenorhabditis elegans
WBGene00006202 str-156 Y9C9A.11 Caenorhabditis elegans
WBGene00006284 str-258 C01B4.3 Caenorhabditis elegans
WBGene00006577 tlf-1 F39H11.2 Caenorhabditis elegans
WBGene00007426 glr-10 C08B6.5 Caenorhabditis elegans
WBGene00007518 del-8 C11E4.3 Caenorhabditis elegans
WBGene00007791 C28A5.6 C28A5.6 Caenorhabditis elegans
WBGene00008470 E03H4.2 E03H4.2 Caenorhabditis elegans
WBGene00008473 E03H4.5 E03H4.5 Caenorhabditis elegans
WBGene00008574 srbc-61 F08E10.2 Caenorhabditis elegans
WBGene00008630 nhr-175 F09F3.10 Caenorhabditis elegans
WBGene00008801 acp-3 F14E5.3 Caenorhabditis elegans
WBGene00008894 F16H6.4 F16H6.4 Caenorhabditis elegans
WBGene00009046 F22B8.3 F22B8.3 Caenorhabditis elegans
WBGene00009073 delm-1 F23B2.3 Caenorhabditis elegans
WBGene00009117 F25H2.3 F25H2.3 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule