WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00107837 Genotype  UNC-119::mCherry; gld-1(RNAi)
Phenotype Remark  "To assess neuronal differentiation, the tumor was induced in the pan-neuronal marker (UNC-119::mCherry) strain by gld-1 RNAi and maximum z-projections covering whole gonad arms were used to score the area occupied by UNC-119::mCherry-expressing cells. Concomitant downregulation of either lgg-3 or atg-7 -- both required for autophagy (Fig 3C) -- leads to a reduction of the area occupied by UNC-119::mCherry-expressing cells in the tumor by around 50% and 30%, respectively (Fig 4B and C). Therefore, depletion of autophagy results in impairment of neuronal differentiation within the germline tumor." Remark  (Figure 4B,4C) atg-7 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010882 atg-7 M7.5 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M7.5 M7.5 1944   IV: 11078818-11079018

0 Laboratories

1 Phenotype

Identifier Name Description
WBPhenotype:0000354 cell differentiation variant Variations in the processes leading to the specialization of cell. Differentiation impacts diverse cellular properties such as size, shape, polarity, gene expression and responsiveness to signals/cues.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00049105

0 Strain