WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00091449 Remark  (Figure 5B) psa-1/swsn-1 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004203 swsn-1 Y113G7B.23 Caenorhabditis elegans

8 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y113G7B.23a Y113G7B.23a 2370   V: 20239859-20240007
CDS:Y113G7B.23e Y113G7B.23e 1560   V: 20239859-20240007
CDS:Y113G7B.23c Y113G7B.23c 2379   V: 20239859-20240016
CDS:Y113G7B.23h Y113G7B.23h 1350   V: 20239859-20240016
CDS:Y113G7B.23f Y113G7B.23f 1569   V: 20239859-20240016
CDS:Y113G7B.23d Y113G7B.23d 2067   V: 20239859-20240016
CDS:Y113G7B.23b Y113G7B.23b 2058   V: 20239859-20240007
CDS:Y113G7B.23g Y113G7B.23g 1341   V: 20239859-20240007

1 Laboratories

Primary Identifier
HS

1 Phenotype

Identifier Name Description
WBPhenotype:0000483 no gut granules Animals lack the different inclusions within the intestinal cytoplasm, including birefringent crystalline objects and other dark-staining endosomes. In C. elegans these contents typically include glycogen granules (polysaccharide storage), rhabditin (carbohydrate storage), yolk granules (lipid and protein), and concentrated waste products (Wormatlas).

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00040473

1 Strain

WormBase ID
WBStrain00000001