WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00077343 Phenotype Remark  The spread (extent) of JAM-1 and HMP-1 was increased markedly in the lateral membrane of epidermal cells in let-413(RNAi) embryos. LET-413 is required to position apical junction proteins subapically.
Remark  exact sequence used for RNAi not stated by authors, genomic sequence of gene used for curation
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002632 let-413 F26D11.11 Caenorhabditis elegans

6 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F26D11.11b F26D11.11b 2100   V: 7973449-7973553
CDS:F26D11.11c F26D11.11c 2121   V: 7973449-7973553
CDS:F26D11.11d F26D11.11d 2070   V: 7973449-7973553
CDS:F26D11.11a F26D11.11a 2031   V: 7973552-7973553
CDS:F26D11.11e F26D11.11e 2049   V: 7973449-7973553
CDS:F26D11.11f F26D11.11f 2010   V: 7973552-7973553

1 Laboratories

Primary Identifier
ML

1 Phenotype

Identifier Name Description
WBPhenotype:0000436 protein subcellular localization variant Any variation in the placement of a protein within in a cell or cellular compartment compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004765

0 Strain