WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00091275 Genotype  unc-119(ed3) III; cbgIs98[pPept-1:GFP::rab-11.1;unc-119(+)]
Phenotype Remark  RNAi of unc-60 (ADF-cofilin) causes ectopic, peripheral microfilaments (F-actin, as determined by fluorescent (Rhodamine) phalloidin staining) and apically clustered GFP-RAB-11 labelled recycling endosomes (REs) in enterocytes. Remark  (Figure S4r,s) C38C3.5/unc-60 RNAi; Authors report that the unc-60a/b feeding clone was a gift from Carrie Cowan (Research Institute of Molecular Pathology, Vienna); cDNA coding sequence (C38C3.5b) used for curation

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006794 unc-60 C38C3.5 Caenorhabditis elegans
WBGene00302980 F53E2.2 F53E2.2 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53E2.2 F53E2.2 498   V: 1475139-1475141
CDS:C38C3.5 C38C3.5 459   V: 1475139-1475141

1 Laboratories

Primary Identifier
MZE

4 Phenotype

Identifier Name Description
WBPhenotype:0000436 protein subcellular localization variant Any variation in the placement of a protein within in a cell or cellular compartment compared to control.
WBPhenotype:0001587 actin organization biogenesis phenotype Animals exhibit variations in the formation and/or arrangement of actin, an abundant cytoskeletal protein in most cells, often linked to the plasma membrane and concentrated at cell junctions compared to control (Wormatlas).
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0002107 RAB-11 recycling endosome localization variant Any variation in the subcellular localization of membrane bound organelles, known as recycling endosomes, positive for the RAB protein RAB-11, that traffic material from early endosomes back to the plasma membrane of the cell, thereby recycling recently endocytosed material to be reused at the plasma membrane.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041129

0 Strain