WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00077154 Genotype  PIE-1::GFP
Phenotype Remark  failed to gastrulate

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00005014 spt-4 F54C4.2 Caenorhabditis elegans
WBGene00005015 spt-5 K08E4.1 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54C4.2 F54C4.2 363   III: 69226-69430
CDS:K08E4.1 K08E4.1 3627   IV: 12051497-12051544

1 Laboratories

Primary Identifier
LD

2 Phenotype

Identifier Name Description
WBPhenotype:0000867 embryonic arrest Cessation of development during any stage occurring after fertilization and until hatching compared to control.
WBPhenotype:0000047 gastrulation variant Variations in the process by which the germ layers become positioned in an embryo compared to control animals. Gastrulation involves the proper ingression of small groups of cells at various times into the blastocoel space.

2 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000436 protein subcellular localization variant Any variation in the placement of a protein within in a cell or cellular compartment compared to control.
WBPhenotype:0000103 gut granule development variant Any variation in the progression of the different inclusions within the intestinal cytoplasm, including birefringent crystalline objects and other dark-staining endosomes over time compared to control. In C. elegans these contents might include glycogen granules (polysaccharide storage), rhabditin (carbohydrate storage), yolk granules (lipid and protein), and concentrated waste products (Wormatlas).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00005411

0 Strain