WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00092411 Phenotype Remark  sec-16 RNAi led to nearly complete loss of puncta labelled by anti-TFG-1 antibodies, and the few structures that were observed seemed abnormally large
Remark  (Figure 3c) sec-16 RNAi. Authors report testing three different dsRNA sequences to knockdown sec-16 and all produced similar results. One selected for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013985 sec-16A.1 ZK512.5 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK512.5a ZK512.5a 3699   III: 9125839-9125853
CDS:ZK512.5b ZK512.5b 3675   III: 9126236-9126266

1 Laboratories

Primary Identifier
MSN

2 Phenotype

Identifier Name Description
WBPhenotype:0000425 antibody staining reduced Any variation that results in a decrease in the characteristic expression of a gene product, as detected by antibody staining, compared to control animals.
WBPhenotype:0001403 antibody subcellular localization variant Any variation in the placement of a protein, as detected by antibody staining, within in a cell or cellular compartment compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038310

0 Strain