WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00077428 Phenotype Remark  Oocytes stacked in two or three rows. Oocytes in proximal arms varied in size, while most oocytes were reduced in size, some oocytes were similar to control oocytes, and rarevery small cells with nuclei were occasionally observed within the proximal half of the ovary.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

3 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004241 puf-5 F54C9.8 Caenorhabditis elegans
WBGene00004242 puf-6 F18A11.1 Caenorhabditis elegans
WBGene00004243 puf-7 B0273.2 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54C9.8 F54C9.8 1662   II: 8575577-8575682
CDS:F18A11.1 F18A11.1 1458   II: 13040180-13040420
CDS:B0273.2 B0273.2 1458   IV: 5486748-5486852

1 Laboratories

Primary Identifier
TE

8 Phenotype

Identifier Name Description
WBPhenotype:0000313 meiotic progression during oogenesis variant Developing oocytes show defects in their initial entry or progression through the meiotic pathway (such as failure to exit diakinesis).
WBPhenotype:0000186 oogenesis variant Any aberrancy in the processes that influence the generation and maturation of oocytes compared to control animals.
WBPhenotype:0000722 nucleolus variant Animals exhibit variations in the appearance of nucleoli compared to control animals.
WBPhenotype:0000668 endomitotic oocytes Any variation that results in the presence of mature oocytes with distended polyploid nuclei. In C. elegans, such oocytes mature and exit diakinesis, but are often not properly ovulated or fertilized.
WBPhenotype:0000511 nuclear positioning variant Variations in the directed movement of the nucleus to a specific location within a cell compared to control.
WBPhenotype:0001762 uptake of yolk defective Yolk is not taken up by oocytes in the same manner or to the same degree as observed for control animals. This often leads to an accumulation of yolk in the pseudocoelom.
WBPhenotype:0001792 nuclei small Nuclei of specific cells are smaller compared to control animals.
WBPhenotype:0001924 oocytes stacked Oocytes are found one on top of the other in the dorsal to ventral orientation in the gonad.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00029045

1 Strain

WormBase ID
WBStrain00000001