WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00067554 Genotype  sma-6(e1482)
Phenotype Remark  The Phenotype reported is relevant to the genetic interaction observed. It it NOT a Phenotype induced by RNAi alone. Remark  To systematically test for genetic interactions between query-target pairs, worms harboring a weak loss-of-function mutation in a query gene were targeted for RNAi-mediated reduction of function in a second (target) gene by feeding the appropriate dsRNA. 11 query genes and 858 target genes were tested.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003918 par-3 F54E7.3 Caenorhabditis elegans

13 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E7.3m F54E7.3m 3756   III: 5668541-5668732
CDS:F54E7.3e F54E7.3e 4356   III: 5668541-5668732
CDS:F54E7.3f F54E7.3f 3894   III: 5668541-5668732
CDS:F54E7.3d F54E7.3d 4365   III: 5668541-5668732
CDS:F54E7.3a F54E7.3a 4131   III: 5664372-5664539
CDS:F54E7.3b F54E7.3b 4140   III: 5664372-5664539
CDS:F54E7.3c F54E7.3c 4023   III: 5668541-5668861
CDS:F54E7.3g F54E7.3g 3903   III: 5668541-5668732
CDS:F54E7.3h F54E7.3h 4593   III: 5664372-5664539
CDS:F54E7.3i F54E7.3i 4602   III: 5664372-5664539
CDS:F54E7.3j F54E7.3j 3984   III: 5664372-5664539
CDS:F54E7.3k F54E7.3k 3993   III: 5664372-5664539
CDS:F54E7.3l F54E7.3l 3747   III: 5668541-5668732

1 Laboratories

Primary Identifier
RP

1 Phenotype

Identifier Name Description
WBPhenotype:0000531 organism development variant Any variation in the progression of a worm at any time from its fertilization to adulthood compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031036

0 Strain