WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00047106 Remark 
Secondary Identifier 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

10 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00023477 nspc-1 C03G5.8 Caenorhabditis elegans
WBGene00044338 nspc-3 C03G5.10 Caenorhabditis elegans
WBGene00015392 nspc-7 C03G5.2 Caenorhabditis elegans
WBGene00009634 nspc-9 F42F12.1 Caenorhabditis elegans
WBGene00009640 nspc-10 F42F12.9 Caenorhabditis elegans
WBGene00023493 nspc-12 F42F12.10 Caenorhabditis elegans
WBGene00009637 nspc-13 F42F12.6 Caenorhabditis elegans
WBGene00009638 nspc-14 F42F12.7 Caenorhabditis elegans
WBGene00009639 nspc-15 F42F12.8 Caenorhabditis elegans
WBGene00008961 F19H6.6 F19H6.6 Caenorhabditis elegans

9 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C03G5.8 C03G5.8 306   X: 8534727-8535029
CDS:C03G5.2 C03G5.2 306   X: 8541887-8541889
CDS:F42F12.10 F42F12.10 306   X: 12356258-12356560
CDS:F42F12.6 F42F12.6 306   X: 12357508-12357510
CDS:F42F12.7 F42F12.7 306   X: 12358665-12358967
CDS:F42F12.8 F42F12.8 306   X: 12360769-12360771
CDS:C03G5.10 C03G5.10 306   X: 8537108-8537110
CDS:F42F12.1 F42F12.1 306   X: 12343005-12343307
CDS:F42F12.9 F42F12.9 306   X: 12343635-12343637

1 Laboratories

Primary Identifier
TH

0 Phenotype

4 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000535 organism morphology variant Animals exhibit variations in the form, structure or composition of any part of their anatomy compared to control animals.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00025054

0 Strain