WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00066131 Phenotype Remark  embryos died during gastrulation with severe defects in cell patterning

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003905 pad-1 Y18D10A.13 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y18D10A.13 Y18D10A.13 7254   I: 12878652-12878804

0 Laboratories

5 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000242 body elongation defective The epidermal cells of the embryo fail to elongate. In C. elegans, this elongation occurs along an anterior-posterior axis, which is required to transform the bean-shaped embryo into the elongated shape of the worm.
WBPhenotype:0000047 gastrulation variant Variations in the process by which the germ layers become positioned in an embryo compared to control animals. Gastrulation involves the proper ingression of small groups of cells at various times into the blastocoel space.
WBPhenotype:0000364 gut granule birefringence misplaced The birefringent inclusions typically found in the intestinal cytoplasm accumulate extracellularly in the intestinal lumen.
WBPhenotype:0001536 embryonic cell patterning variant Embryos exhibit variations in the patterning of differentiated cell types, compared to control.

1 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000354 cell differentiation variant Variations in the processes leading to the specialization of cell. Differentiation impacts diverse cellular properties such as size, shape, polarity, gene expression and responsiveness to signals/cues.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004319

0 Strain