WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00091249 Genotype  unc-119(ed3) III; cbgIs91[pPept-1:pept-1::DsRed;unc-119(+)]; pwIs50[lmp-1::GFP +Cb-unc-119(+)]
Phenotype Remark  RNAi resulted in a diffuse distribution of late endosomes, as indicated by the late endosome marker LMP-1::GFP. LMP-1::GFP exhibited reduced fluorescence compared to controls. Remark  (Figure 3f) M117.2/par-5 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003920 par-5 M117.2 Caenorhabditis elegans
WBGene00010919 M117.3 M117.3 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M117.2b M117.2b 381   IV: 11820991-11821284
CDS:M117.2a M117.2a 747   IV: 11820991-11821284
CDS:M117.3 M117.3 378   IV: 11823516-11823602

1 Laboratories

Primary Identifier
MZE

3 Phenotype

Identifier Name Description
WBPhenotype:0001278 transgene expression reduced Any decrease in the intensity of expression of a gene product produced by exogenous DNA that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0002105 late endosome localization variant Any variation in the subcellular localization of membrane bound organelles, known as late endosomes, that traffic material from early endosomes to internal compartments of the cell, such as lysosomes or the Golgi apparatus, compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041129

0 Strain