WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00061300 Remark  Experiment was done with extensive exposure to RNAi, defined as the following: L4 hermaphrodites were placed on the Petri dish. These hermaphrodites were transferred to a new Petri dish daily, and progeny were scored for the Muv phenotype. We defined limited and extensive exposure to RNAi as progeny laid on day 1 and day 2 plates or day 3 and day 4 plates, respectively.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004888 smo-1 K12C11.2 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K12C11.2 K12C11.2 276   I: 1340703-1340768

1 Laboratories

Primary Identifier
WU

2 Phenotype

Identifier Name Description
WBPhenotype:0000697 protruding vulva Animals undergo incomplete vulval morphogenesis, resulting in the formation of a single protrusion at the site of the vulva.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00025140

1 Strain

WormBase ID
WBStrain00000001