WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00102773 Phenotype Remark  Authors report a decrease in lipid droplet size as well as growth rate variant, slim, sterile and pale phenotypes (see Table 3 in paper) in response to fat-6 RNAi
Remark  (Table 3, Figure 4, 5) fat-6 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001398 fat-6 VZK822L.1 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:VZK822L.1a VZK822L.1a 1020   IV: 11913819-11914098
CDS:VZK822L.1c VZK822L.1c 690   IV: 11913819-11914098
CDS:VZK822L.1b VZK822L.1b 888   IV: 11913819-11914098

1 Laboratories

Primary Identifier
LIB

6 Phenotype

Identifier Name Description
WBPhenotype:0000688 sterile Animals generate defective gametes, are otherwise unable to reproduce or they generate progeny that are unable to reproduce.
WBPhenotype:0001183 fat content reduced Animals exhibit less fat or lipid than observed in control animals.
WBPhenotype:0000676 growth rate variant The increase in size or mass of an organism over time during the lifespan of the organism or over any developmental stage(s) is not similar to that observed for control animals.
WBPhenotype:0000164 thin Animals exhibit a reduced girth compared to a control animal of the same developmental stage.
WBPhenotype:0001261 pale Animals show deficiencies in chroma resulting in increased translucency.
WBPhenotype:0002279 fat associated body size decreased Animals exhibit a decrease in the size of fat containing organelles compared to control. In C. elegans this can be assayed by BODIPY 493/503 staining.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00042257

0 Strain