WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00024829 Genotype  NL4256 rrf-3(pk1426)
Secondary Identifier  Simmer:C46C2.1:Repeat_a

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006941 wnk-1 C46C2.1 Caenorhabditis elegans

20 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C46C2.1d C46C2.1d 5523   IV: 9200431-9200439
CDS:C46C2.1m C46C2.1m 5538   IV: 9200431-9200439
CDS:C46C2.1n C46C2.1n 5553   IV: 9200431-9200439
CDS:C46C2.1p C46C2.1p 5544   IV: 9200431-9200439
CDS:C46C2.1r C46C2.1r 5547   IV: 9200431-9200439
CDS:C46C2.1t C46C2.1t 5055   IV: 9200431-9200439
CDS:C46C2.1h C46C2.1h 5043   IV: 9200431-9200439
CDS:C46C2.1s C46C2.1s 5064   IV: 9200431-9200439
CDS:C46C2.1i C46C2.1i 5367   IV: 9203294-9203377
CDS:C46C2.1l C46C2.1l 5373   IV: 9203294-9203377
CDS:C46C2.1a C46C2.1a 5517   IV: 9200431-9200439
CDS:C46C2.1b C46C2.1b 5034   IV: 9200431-9200439
CDS:C46C2.1c C46C2.1c 5358   IV: 9203294-9203377
CDS:C46C2.1e C46C2.1e 5040   IV: 9200431-9200439
CDS:C46C2.1f C46C2.1f 5364   IV: 9203294-9203377
CDS:C46C2.1g C46C2.1g 5526   IV: 9200431-9200439
CDS:C46C2.1j C46C2.1j 5532   IV: 9200431-9200439
CDS:C46C2.1k C46C2.1k 5049   IV: 9200431-9200439
CDS:C46C2.1o C46C2.1o 5070   IV: 9200431-9200439
CDS:C46C2.1q C46C2.1q 5061   IV: 9200431-9200439

1 Laboratories

Primary Identifier
NL

0 Phenotype

10 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000886 nematode phenotype Animals exhibit variations compared to a given control.
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000031 slow growth Any variation that causes a reduction in growth rate compared to control.
WBPhenotype:0000062 lethal Animals die prematurely at any stage of the life cycle.
WBPhenotype:0000054 larval lethal The animal dies at any time between hatching and onset to adulthood.
WBPhenotype:0000059 larval arrest The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage.
WBPhenotype:0001037 sterile progeny Any variation that compromises the reproductive ability of the progeny of an animal.
WBPhenotype:0000060 adult lethal Premature lethality during the adult stage. When applied to large-scale RNAi screens in C. elegans, this phenotype is present in at least 10% of analyzed worms, or at least 30% in the case of rrf-3 perturbed background.
WBPhenotype:0000049 postembryonic development variant Any variation in the progression of an animal over time, from hatching to adulthood, compared to control.
WBPhenotype:0000689 maternal sterile Animals produce no or very few embryos as a result of experimental treatment. This is in contrast to sterility due to genetic perturbations (maternal effect sterility).

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00006395

0 Strain