WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00092366 Genotype  adIs2122[GFP::lgg-1]; mboa-7(tm3536)
Phenotype Remark  vps-34 RNAi resulted in increased numbers of GFP::LGG-1 aggregates in seam cells, indicative of an autophagy defect Remark  (Figure 6) vps-34 RNAi. Authors state RNAi clones obtained from the Ahringer and Vidal laboratories, Ahringer clone used for curation. If Ahringer clone not available, Vidal laboratory clone used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006932 vps-34 B0025.1 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0025.1a B0025.1a 2706   I: 6028488-6028649
CDS:B0025.1c B0025.1c 2694   I: 6028500-6028649

1 Laboratories

Primary Identifier
XH

2 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0002282 autophagy increased Animals exhibit increased levels of the process by which their cells digest parts of their own cytoplasm, compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041372

0 Strain