WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00093519 Genotype  Pnhx-2::mCherry::LGG-1
Phenotype Remark  bec-1 RNAi disrupted the punctate subcellular distribution of transgenic mCherry::LGG-1, resulting in a diffuse localization pattern, indicative of defects in formation of autophagosomes Remark  (Figure S4) bec-1 RNAi
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000247 bec-1 T19E7.3 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T19E7.3a T19E7.3a 1128   IV: 5661340-5661525
CDS:T19E7.3b T19E7.3b 357   IV: 5661340-5661525

1 Laboratories

Primary Identifier
VK

2 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0000736 autophagy variant Animals exhibit variations in the process by which their cells digest parts of their own cytoplasm, compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041269

1 Strain

WormBase ID
WBStrain00040040