WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00097815 Genotype  Phsp::INA-1(N)::GFP; ced-1(e1735); ced-5(n1812)
Phenotype Remark  scrm-1 RNAi disrupts the localization of INA-1(N)::GFP (extracellular domain of INA-1 fused to GFP) to apoptotic cells of the embryo Remark  (Figure 2Cc) scrm-1 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002179 jph-1 T22C1.7 Caenorhabditis elegans
WBGene00011935 scrm-1 T22H2.5 Caenorhabditis elegans

4 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T22C1.7 T22C1.7 2244   I: 7946944-7947057
CDS:T22H2.5c T22H2.5c 873   I: 11689337-11689390
CDS:T22H2.5a T22H2.5a 870   I: 11689109-11689113
CDS:T22H2.5b T22H2.5b 888   I: 11688966-11688988

1 Laboratories

Primary Identifier
YW

4 Phenotype

Identifier Name Description
WBPhenotype:0000961 pattern of transgene expression variant Any variation in the cellular or subcellular pattern of expression of a gene product produced by exogenous DNA that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0000885 engulfment variant Any variation in the removal of a cell corpse, by a neighboring cell or a phagocyte compared to control.
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001180 accumulated germline cell corpses Animals exhibit an increase in the quantity of germ line cells that have undergone programmed cell death but have not been engulfed.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00036041

0 Strain