WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00091278 Genotype  PGP-1::GFP
Phenotype Remark  Upon RNAi of the dynactin-component arp-1, the apical membrane protein PGP-1::GFP accumulates in basally mislocalised RAB-11-recycling endosomes (REs) (as determined by antibody staining of endogenous RAB-11), in intestinal cells Remark  (Figure S5e) Y53F4B.22/arp-1 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013168 arp-1 Y53F4B.22 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53F4B.22a Y53F4B.22a 1125   II: 15120309-15120401

1 Laboratories

Primary Identifier
MZE

3 Phenotype

Identifier Name Description
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001403 antibody subcellular localization variant Any variation in the placement of a protein, as detected by antibody staining, within in a cell or cellular compartment compared to control.
WBPhenotype:0002107 RAB-11 recycling endosome localization variant Any variation in the subcellular localization of membrane bound organelles, known as recycling endosomes, positive for the RAB protein RAB-11, that traffic material from early endosomes back to the plasma membrane of the cell, thereby recycling recently endocytosed material to be reused at the plasma membrane.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00041129

0 Strain