WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00076047 Genotype  Punc-54::a-syn::gfp, Punc-54::tor-2
Remark  RNAi treatment caused no lethality or enhanced aggregation of a-syn.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015114 trim-21 B0281.8 Caenorhabditis elegans
WBGene00015108 B0281.1 B0281.1 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0281.8a B0281.8a 879   II: 2311490-2311560
CDS:B0281.8b B0281.8b 798   II: 2311490-2311560
CDS:B0281.1 B0281.1 465   II: 2313067-2313401
CDS:B0281.8c B0281.8c 924   II: 2311490-2311560
CDS:B0281.8d B0281.8d 843   II: 2311490-2311560

1 Laboratories

Primary Identifier
UA

0 Phenotype

3 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0000062 lethal Animals die prematurely at any stage of the life cycle.
WBPhenotype:0000679 transgene subcellular localization variant Any variation in the subcellular localization of a gene product produced by DNA coded for by exogenous genetic material that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001405 protein aggregation variant Variations that result in the accumulation of soluble/insoluble protein aggregates in a particular cell or tissue, compared to control. Protein aggregates are often formed by interactions between misfolded protein molecules and/or deficiencies in proper protein folding.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00031384

0 Strain