WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00114839 Phenotype Remark  Depletion of ERM-1 causes lumenal constrictions and obstructions in the intestine. Morphological examinations of ERM-1-depleted larvae in comparison to WT larvae revealed an abnormal gut lumen of pearl string shape featuring multiple obstructions.
Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation. Authors did state they used the following clones to create transcribe dsRNAs for this experiment: yk129b2, yk257f5.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001333 erm-1 C01G8.5 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C01G8.5a C01G8.5a 1692   I: 5284598-5284690
CDS:C01G8.5b C01G8.5b 1695   I: 5284598-5284690

0 Laboratories

2 Phenotype

Identifier Name Description
WBPhenotype:0000710 intestinal morphology variant Animals exhibit variations in the form, structure or composition of the chain of cuboidal cells which form a central lumen lined by microvilli that allow the passage of food, compared to control. Food passes from the posterior pharynx to the intestine where it is digested and then on to the rectum which processes the waste products for excretion (Wormatlas).
WBPhenotype:0001630 gut obstructed Any variation in the developmental progression of the intestine that leads to a blockage in the alimentary canal.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00024261

0 Strain