WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00098787 Genotype  nmy-2(ne3409)
Phenotype Remark  Enhanced endoderm-specification defects. With nmy-2(ne3409) in the background, 62 percent of animals are lacking intestine compared to 4 percent with mom-5(RNAi) alone. Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation. Method of delivery not explicit, authors say injection or feeding. 20C is the semipermissive temp for nmy-2 allele used in this experiment.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003397 mom-5 T23D8.1 Caenorhabditis elegans

2 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T23D8.1a T23D8.1a 1707   I: 9965641-9966113
CDS:T23D8.1b T23D8.1b 1713   I: 9965641-9966113

1 Laboratories

Primary Identifier
WM

2 Phenotype

Identifier Name Description
WBPhenotype:0001637 no Intestine Embryos fail to generate cells that exhibit intestinal specification. In C. elegans, the E blastomere is the precursor of all the intestinal cells.
WBPhenotype:0000708 intestinal development variant Variations in the progression of the intestine over time from its initial formation to its mature structure compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00035593

0 Strain