WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00101419 Genotype  sax-7(eq1)
Phenotype Remark  sax-7(eq1) and hmp-1(RNAi) together result in a decreased length of contact area between Ea and Ep blastomeres, increased circularity of the Ep blastomere, and significant changes to the positioning of the MSxx blastomere compared to the Ea and Ep blastomeres (a measure of Ea/Ep apical constriction). Remark  (Figure 4A,B,C,D) hmr-1 RNAi
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001980 hmr-1 W02B9.1 Caenorhabditis elegans
WBGene00014914 Y52B11A.11 Y52B11A.11 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y52B11A.11 Y52B11A.11 1026   I: 11067699-11067767
CDS:W02B9.1b W02B9.1b 8763   I: 11076372-11076623
CDS:W02B9.1e W02B9.1e 2805   I: 11076372-11076623
CDS:W02B9.1a W02B9.1a 3810   I: 11076372-11076623
CDS:W02B9.1d W02B9.1d 3195   I: 11076372-11076623

1 Laboratories

Primary Identifier
SU

3 Phenotype

Identifier Name Description
WBPhenotype:0000770 embryonic cell morphology variant Animals exhibit variations in the appearance of embryonic cells compared to control.
WBPhenotype:0002067 apical constriction variant Animals differ from control animals in cortical actomyocin dynamics leading to internalization of endodermal precursor cells during gastrulation.
WBPhenotype:0001117 cell cell contacts abnormal early emb Cell-cell contacts are abnormal in the early embryo.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00036330

0 Strain