WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00092483 Phenotype Remark  RNAi against all four pufs (5,6,7,10) gave a Po phenotype of a double row of small oocytes that are in diakinesis and an F1 phenotype of sterile hermaphrodites, which appear normal in the soma, but where the germ line contains reduced or no germ cells. Individual injections of each RNAi alone showed no phenotypes.
Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

3 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004241 puf-5 F54C9.8 Caenorhabditis elegans
WBGene00004242 puf-6 F18A11.1 Caenorhabditis elegans
WBGene00004243 puf-7 B0273.2 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54C9.8 F54C9.8 1662   II: 8575577-8575682
CDS:F18A11.1 F18A11.1 1458   II: 13040180-13040420
CDS:B0273.2 B0273.2 1458   IV: 5486748-5486852

1 Laboratories

Primary Identifier
BS

2 Phenotype

Identifier Name Description
WBPhenotype:0000774 gametogenesis variant Any variation in the processes that govern the generation and maintenance of gametes compared to control.
WBPhenotype:0001945 oocytes small The size of haploid female germ cells (oocytes) are significantly smaller compared to control.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00004886

0 Strain