WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00077088 Genotype  scm::GFP
Phenotype Remark  both daughters of V seam cells took on the normal fate of the posterior daughters, causing an overproduction of seam cells Remark  Exact sequence used for RNAi not stated by authors, spliced coding region sequence of gene used for curation. Authors note they used double-stranded RNA of apr-1 spanning the 26353085 bp region of the apr-1 cDNA, but dont specify which cDNA clone.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000156 apr-1 K04G2.8 Caenorhabditis elegans

3 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K04G2.8c K04G2.8c 2679   I: 8050043-8050225
CDS:K04G2.8b K04G2.8b 3567   I: 8050043-8050225
CDS:K04G2.8a K04G2.8a 3561   I: 8050043-8050225

1 Laboratories

Primary Identifier
HS

1 Phenotype

Identifier Name Description
WBPhenotype:0000827 V lineages variant The descendants of any of the V precursor cells (V1-V6) exhibit altered developmental programs compared to their counterparts in control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00029082

0 Strain