WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00071517 Genotype  bIs1(vit-2::GFP); rrf-3(pk1426)
Phenotype Remark  RNAi treatment resulted in an abnormal accumulation of YP170-GFP in the body cavity. Remark  Primary screen. L1 larval stage was applied to induced RNAi cultures.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

4 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013236 znf-593 Y56A3A.18 Caenorhabditis elegans
WBGene00013237 ndab-1 Y56A3A.19 Caenorhabditis elegans
WBGene00017507 F16B4.5 F16B4.5 Caenorhabditis elegans
WBGene00017508 F16B4.6 F16B4.6 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y56A3A.19 Y56A3A.19 402   III: 11915253-11915510
CDS:F16B4.6a F16B4.6a 453   V: 1587206-1587350
CDS:F16B4.6b F16B4.6b 222   V: 1587584-1587693
CDS:F16B4.5b F16B4.5b 381   V: 1589081-1589133
CDS:Y56A3A.18 Y56A3A.18 387   III: 11917946-11918206

1 Laboratories

Primary Identifier
RT

2 Phenotype

Identifier Name Description
WBPhenotype:0000961 pattern of transgene expression variant Any variation in the cellular or subcellular pattern of expression of a gene product produced by exogenous DNA that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001425 receptor mediated endocytosis defective Animals exhibit defects in the cell-mediated uptake of external materials via receptor activity. Receptor-mediated endocytosis ensures specificity of transport and generally occurs via clathrin-coated pits and vesicles. In C. elegans, this is often judged by the lack of yolk uptake in oocytes.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00030951

0 Strain