WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00101801 Genotype  rrf-3(pk1426) II; ccIs4438 (intrinsic CC(CoelomoCyte)::gfp) III
Phenotype Remark  Postembryonic lit-1 RNAi results in both fewer M-lineage derived coelomocytes (in 14.1% of animals) and extra M-lineage derived coelomocytes (in 40.8% of animals) as determined by CC::GFP Remark  (Table 2) lit-1 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003048 lit-1 W06F12.1 Caenorhabditis elegans

5 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W06F12.1a W06F12.1a 1905   III: 13714045-13714184
CDS:W06F12.1e W06F12.1e 1365   III: 13718359-13718466
CDS:W06F12.1c W06F12.1c 1314   III: 13719664-13719720
CDS:W06F12.1b W06F12.1b 1389   III: 13718012-13718030
CDS:W06F12.1d W06F12.1d 1806   III: 13702192-13702246

1 Laboratories

Primary Identifier
LW

4 Phenotype

Identifier Name Description
WBPhenotype:0000095 M lineage variant The descendants of the M precursor cell exhibit variations in developmental programs compared to their counterparts in control animals. In C. elegans the M lineage is a postembryonic mesodermal lineage.
WBPhenotype:0000961 pattern of transgene expression variant Any variation in the cellular or subcellular pattern of expression of a gene product produced by exogenous DNA that has been introduced into the organism compared to its expression in control animals.
WBPhenotype:0001912 fewer coelomocytes The number of coelomocytes are reduced compared to control animals. Coelomocytes are free-floating spherical cells lying in the pseudocoelomic cavity of animals that can endocytose many compounds.
WBPhenotype:0001913 excess coelomocytes The number of coelomocytes are increased compared to control animals. Coelomocytes are free-floating spherical cells lying in the pseudocoelomic cavity of animals that can endocytose many compounds.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00033137

0 Strain