WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00093341 Phenotype Remark  Reducing TOMM-40 levels, by exposing 4th stage larvae to feeding RNAi, causes a growth retardation in their progeny with most animals arresting as embryos or between the 1st and the 3rd larval stages (Figure 3A). As an index of the growth defect, the number of larvae in the 1st larval stage (L1) was counted 24 hours after removing their mothers in a feeding RNAi assay. While only 0.4% (n = 223) of animals fed with empty vector (RNAi) bacteria were in stage L1, 60% (n =194) of tomm-40(RNAi) animals were in this stage. Later, most of the larvae appeared to arrest permanently at the L2 or L3 stage although many still remained in the L1 stage. Using high power microscopy, we could not detect any catastrophic developmental defects that might cause the larval arrest.
Remark  (Figure 3A) tomm-40 RNAi

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007686 tomm-40 C18E9.6 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C18E9.6 C18E9.6 906   II: 8972375-8972498

1 Laboratories

Primary Identifier
GOT

2 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000059 larval arrest The developmental program of the animals halts at any larval stage and thus fails to reach adulthood. In C.elegans, this occurs anytime during L1-L4 stage.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038075

0 Strain