WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00065113 Genotype  glp-4(bn2);rrf-3(pk1426)
Remark  To avoid confounding effects of progeny in killing assays, used sterile strain glp-4(bn2);rrf-3(pk1426), which lacks the germline altogether (glp-4) and is more sensitive to RNAi (rrf-3). Pseudomonas aeruginosa strain used was the clinical isolate PA14.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002632 let-413 F26D11.11 Caenorhabditis elegans

6 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F26D11.11b F26D11.11b 2100   V: 7973449-7973553
CDS:F26D11.11c F26D11.11c 2121   V: 7973449-7973553
CDS:F26D11.11d F26D11.11d 2070   V: 7973449-7973553
CDS:F26D11.11a F26D11.11a 2031   V: 7973552-7973553
CDS:F26D11.11e F26D11.11e 2049   V: 7973449-7973553
CDS:F26D11.11f F26D11.11f 2010   V: 7973552-7973553

1 Laboratories

Primary Identifier
WE

0 Phenotype

1 Phenotype _ Not _ Observed

Identifier Name Description
WBPhenotype:0001013 pathogen susceptibility increased Animals are more prone to infection compared to control.

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00028482

0 Strain