WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00088813 Phenotype Remark  Several cells of the arrested dut-1(RNAi) embryos displayed characteristic apoptotic features, including highly condensed electron-dense chromatin structures as visualized by electron microscopy. Furthermore, a nearly twofold increase in the number of apoptotic cell corpses and TUNEL-positive cells was observed in dut-1(RNAi) embryos compared with the wild type.
Remark  dut-1(RNAi); Authors do not explicitly state what clone or sequence was used to knockdown dut-1 by RNAi, but based on references to other papers, this experiment is annotated as using the Vidal dut-1 RNAi clone delivered by feeding.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010609 dut-1 K07A1.2 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K07A1.2 K07A1.2 1476   I: 9585421-9585801

1 Laboratories

Primary Identifier
TTV

2 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0000183 apoptosis increased Any perturbation that causes an elevation in the frequency of cell death by apoptosis compared to control animals.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00038332

1 Strain

WormBase ID
WBStrain00000001