WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00097863 Phenotype Remark  rab-7 RNAi resulted in spindle orientation defects, embryonic lethality and an accumulation of undigested apoptotic corpses in the germline
Remark  (Table S1) rab-7 RNAi. Exact sequence used for RNAi not stated by authors, Ahringer laboratory clone used for curation.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004271 rab-7 W03C9.3 Caenorhabditis elegans
WBGene00012221 W03C9.5 W03C9.5 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03C9.3 W03C9.3 630   II: 11965655-11965741

1 Laboratories

Primary Identifier
JCP

3 Phenotype

Identifier Name Description
WBPhenotype:0000050 embryonic lethal Animals die during embryonic development. In C. elegans, often assayed as refractile eggs that fail to hatch; when applied to large-scale RNAi screens in C. elegans, more than 10% of embryos die.
WBPhenotype:0001681 spindle orientation variant The alignment of the spindle relative to other cellular structures varies from that observed in control animals.
WBPhenotype:0001180 accumulated germline cell corpses Animals exhibit an increase in the quantity of germ line cells that have undergone programmed cell death but have not been engulfed.

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00036342

1 Strain

WormBase ID
WBStrain00000001